PRGC - Publications

Consortium Coordinator - Dr. Henry T. Nguyen
Division of Plant Sciences - University of Missouri
1-31 Agriculture Building
Columbia, MO 65211, USA
E-mail | Tel : 573-882-5494 | Fax : 573-882-1469

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PRGC - NSF Root Genomics Project Publications, Proceedings and Invited Presentations

Journal Publications

Book Chapters

Proceedings and Invited Presentations

Journal Publications

2007

Poroyko V, Spollen WG, Hejlek LG, Hernandez AG, LeNoble ME, Davis G, Nguyen HT, Springer GK, Sharp RE, Bohnert HJ (2007) Comparing regional transcript profiles from maize primary roots under well-watered and low water potential conditions. Journal of Experimental Botany 58: 279-289 (advance access published Sept. 21, 2006) (Invited, special issue on Integrated Approaches to Sustain and Improve Plant Production Under Drought Stress)

Zhu J, Alvarez S, Marsh E, LeNoble ME, Cho I-J, Sivaguru M, Chen S, Nguyen HT, Wu Y, Schachtman DP, Sharp RE (2007) Cell wall proteome in the maize primary root elongation zone. II. Region-specific changes in water soluble and lightly ionically-bound proteins under water deficit. Plant Physiology (provisionally accepted, 9/15/07)

2006

Alvarez S, Goodger JQD, Marsh EL, Chen S, Asirvatham VS, Schachtman DP (2006). Characterization of the maize xylem sap proteome. Journal of Proteome Research 5:963-972.
Zhu J, Chen S, Alvarez S, Asirvatham VS, Schachtman DP, Wu Y, Sharp RE (2006). Cell wall proteome in the maize primary root elongation zone: extraction and identification of water soluble and lightly ionically-bound proteins. Plant Physiology 140:311-325.

2005

Goodger JQD, Sharp RE, Marsh EL, Schachtman DP (2005) Relationships between xylem sap constituents and leaf conductance of well-watered and water-stressed maize across three xylem sap sampling techniques. Journal of Experimental Botany 56: 2389-2440.
Poroyko V, Hejlek LG, Spollen WG, Springer GK, Nguyen HT, Sharp RE, Bohnert HJ (2005) The maize root transcriptome by serial analysis of gene expression. Plant Physiology 138: 1700-1710.

2004

Sharp RE, Poroyko V, Hejlek LG, Spollen WG, Springer GK, Bohnert HJ, Nguyen HT (2004) Root growth maintenance during water deficits: physiology to functional genomics. Journal of Experimental Botany 55: 2343-2351.
Poroyko V, Calugaru V, Fredricksen M, Bohnert HJ (2004) Virtual-SAGE: A new approach to EST data analysis. DNA Research 11: 145-152.

Book Chapters

2007

Ober ES, Sharp RE (2007) Regulation of root growth responses to water deficit. In: Advances in Molecular Breeding toward Drought and Salt Tolerant Crops (MA Jenks, PM Hasegawa, SM Jain, eds.), Springer Publishing (in press)

Proceedings and Invited Presentations

2007

Sharp RE, J Zhu, S Alvarez, ME LeNoble, E Marsh, S Chen, DP Schachtman, Y Wu, B Valliyodan, HT Nguyen, O Yu, I-J Cho, M Sivaguru. Root growth maintenance under water deficits: physiology to cell wall proteomics---and back to physiology. European Grain Legumes Integrated Project workshop on Abiotic Stress in Legumes, Tunis, Tunisia, March 2007
Sharp RE. Root growth maintenance under water deficits: physiology to cell wall proteomics---and back to physiology. Seminar, Plant Biology Graduate Program, Univ. Massachusetts-Amherst, March 2007

2006

Davis G. Getting to the root of the problem: Understanding drought response in maize roots. Plant and Animal Genome XIV Conference, San Diego, California, January 2006.
Davis D, T Musket, and G Davis. Maize root transcripts are clustered in the genome on the basis of water stress-response and function. 48th Annual Maize Genetics Conference, Monterey, California, March 2006.
Schachtman DP, Alvarez A, Chen S, Goodger J, Bohnert H, Sharp RE, Marsh E. Maize root sensing and signaling under drought. Interdisciplinary Plant Group Symposium on Plant Roots: From Genes to Form and Function. University of Missouri-Columbia, May 2006.
Schachtman DP, Alvarez S, Zhu J, Marsh E, Chen S, Bondra ME, Wu Y, Sharp RE. Root signaling and root growth maintenance in maize under drought. April 2006 Keystone Symposia Plenary Session Speaker, Copper Mountain, Colorado.
Sharp RE, J Zhu, S Alvarez, ME LeNoble, E Marsh, S Chen, DP Schachtman, Y Wu, W Tao, HT Nguyen, WG Spollen, GK Springer, I-J Cho and M Sivaguru. Root growth maintenance during water deficits: region-specific responses of the cell wall proteome. Interdisciplinary Plant Group Symposium on Plant Roots: From Genes to Form and Function. University of Missouri-Columbia, May 2006.
Sharp RE, J Zhu, ME LeNoble, W Tao, HT Nguyen, WG Spollen, GK Springer, I-J Cho, M Sivaguru, S Alvarez, S Chen, E Marsh, DP Schachtman, Y Wu. Root growth maintenance under water deficits: region-specific responses of the cell wall proteome. Gordon Research Conference on Salt and Water Stress in Plants, Univ. Oxford, UK, September 2006
Sharp RE. Root growth maintenance under water deficits: physiology to functional genomics---and back to physiology. International Rice Research Institute (IRRI), Drought Frontier Project Planning Workshop, Los Banos, Philippines, October 2006
Sharp RE. Regulation of root growth responses to water deficit. University of Missouri-Gyeongsang National University joint plant biology symposium, Jinju, South Korea, October 2006
Sharp RE, J Zhu, ME LeNoble, W Tao, HT Nguyen, WG Spollen, GK Springer, I-J Cho, M Sivaguru, S Alvarez, S Chen, E Marsh, DP Schachtman, Y Wu. Root growth maintenance under water deficits: physiology to cell wall proteomics---and back to physiology. Crop Science Society of America symposium on Crop Stress Physiology: The Linkage of Genes and Functions, Indianapolis, Indiana, November 2006

2005

Bohnert and members of the consortium. The maize transcriptome under well-watered and water deficit conditions. Okayama University, Japan, August 2005.
Davis G, Davis D, Musket T, Gerau M, Dierking R. 2005. Root genes for water response. Presented at the Root Biology Workshop at the Plant and Animal Genome Conference.
Davis G, Bohnert H, Springer G, Schachtman D, Sharp R, Wu Y, and Nguyen H. 2005. Root Growth Maintenance during Water Deficit: Physiology, Genomics, and Proteomics. Proceeding of the 47th Annual Maize Genetics Conference.
LeNoble ME, Zhu J, Alvarez S, Chen S, Marsh E, Schachtman DP, Tao W, Nguyen HT, Spollen WG, Springer GK, Wu Y, Sharp RE. Root growth maintenance under water deficits: region-specific responses of the cell wall proteome. InterDrought-II, an International Conference on Integrated Approaches to Improve Crop Production under Drought Prone Environments, Rome, Italy, September 2005.
Poroyko, V A. Calugaru, V. Spollen, W. Springer, GK. Davis, G. Sharp, RE. Hejlek, LG. Nguyen, HT. Bohnert, HJ. SAGE analysis of the Zea mays primary root. Abstracts of the annual meeting of American Society of Plant Biologists Plant Biology 2005
Schachtman, Goodger, Bohnert, Davis, Wu, Sharp, Springer, Nguyen. Genomic and xylomic approaches to understanding maize root growth maintenance and root to shoot signaling under drought. Plant and Animal Genome Conference, San Diego, CA: Abiotic Stress Workshop, January 2005.
Sharp RE, Cho I-J, Sivaguru M. Role of ABA in root growth maintenance under water deficits: prevention of high levels of reactive oxygen species. Maize Workshop, Plant and Animal Genome XIII Conference, San Diego, January 2005
Sharp RE. Changing views on the role of ABA in root and leaf growth responses to water deficits. Molecular and Environmental Plant Sciences Program, symposium on Biotic and Abiotic Plant Stress. Texas A&M University, March 2005
Sharp RE. Changing views on the role of ABA in root and leaf growth responses to water deficits. Annual Meeting of the Southern Section of the American Society of Plant Biologists, symposium on Whole Plant Physiology: The Forgotten Perspective. Greenville, North Carolina, March 2005
Sharp RE, Zhu J, Alvarez S, Chen S, Marsh E, LeNoble ME, Schachtman DP, Wu Y, Tao W, Nguyen HT, Spollen WG, Springer GK, Cho I-J, Sivaguru M. Root growth maintenance during water deficits: physiology to functional genomics. Interdisciplinary Plant Group Symposium on Genomics and Beyond: Frontiers in Plant Biology. University of Missouri-Columbia, April 2005
Sharp RE, Zhu J, Alvarez S, Chen S, Marsh E, LeNoble ME, Schachtman DP, Tao W, Nguyen HT, Spollen WG, Springer GK, Wu Y. Root growth maintenance under water deficits: region-specific responses of the cell wall proteome. “John Boyer Symposium“, Society for Experimental annual meeting, Barcelona, Spain, July 2005
Sharp RE. Root growth maintenance under water deficits: regulation of reactive oxygen species. Symposium on Root Structure and Function, XVII International Botanical Congress, Vienna, Austria, July 2005
Sharp RE. Changing views on the role of ABA in root and leaf growth responses to water deficits. 15th International Plant Nutrition Colloquium, symposium on “Salinity, Drought and Plant-Soil Water Relations”, Beijing, China, September 2005.
Zhu J, Alvarez S, Chen S, Marsh E, LeNoble ME, Schachtman D, Wu Y, Sharp RE. Cell wall proteome in the maize primary root growth zone: region-specific responses to water deficit. Plant Root Genomics Consortium Proteomics Symposium, Donald Danforth Plant Science Center, St Louis, April 2005.
Zhu J, Alvarez S, Chen S, Marsh E, LeNoble ME, Schachtman D, Wu Y, Sharp RE. Cell wall proteome in the maize primary root growth zone: region-specific responses to water stress. Plant Cell Wall Biosynthesis Meeting, Asilomar Conference Center, California, August 2005 (short talk on poster)

2004

Bohnert H.J., Sharp R.E., Springer G.K., Davis G.L., Schachtman D.P., Wu Y.and Nguyen H. Abiotic stress tolerance in corn. PAG Workshop. San Diego, CA. January, 2004.
Bohnert H.J., Transcript and metabolite analysis during plant stress. FACE Workshop. Monte Verita, Switzerland. March, 2004.
Bohnert H.J., Sharp R.E., Springer G.K., Davis G.L., Schachtman DP., Wu Y. and Nguyen H. Abiotic stress tolerance in corn. Crop Functional Genomics Conference. Jeju, Korea. April 2004.
Bohnert H.J., Ma S., Poroyko V., Li P., Gong Q., Sharp R.E., Springer G.K., Davis G.L., Schachtman D.P., Wu Y. and Nguyen H. Molecular determinants affecting water homeostasis. Symposium on 'Sensing and Responding to Water'. ASPB Annual Meeting. Orlando, Florida. July 2004.
Nguyen, H.T. Genetic mapping and functional genomics of drought tolerance. International Atomic Energy Agency. Vienna, Austria. March 2004.
Nguyen H.T. Transcriptional profiling and proteomic analysis of maize roots under drought stress. Gordon Research Conference on Salt and Water Stress in Plants. Hong Kong. June 13-18, 2004.
Schachtman D.P., Goodger J.Q.D., Marsh E., Asirvatham V.S. Xylomics - A comprehensive analysis of root signals controlling the growth and water loss of maize under drought. Plant and Animal Genome Conference. San Diego, CA. January 2004.
Schachtman, Goodger, Marsh, Asirvatham. Profiling the xylem sap of maize for changes in minerals, organic acids and proteins under drought. Instituto de Biotechnologia- NAM, Cuernavaca, Mexico. November 2004.
Sharp R.E. Chair and discussion leader for session on Whole Plant Responses, Gordon Research Conference on Salt and Water Stress in Plants. University of Hong Kong. June 13-18, 2004.
Sharp RE, Poroyko V, Hejlek LG, Spollen WG, Springer GK, Bohnert HJ, Nguyen HT (2004) Root growth maintenance during water deficits: physiology to functional genomics. Proceedings of the 4th International Crop Science Congress, Brisbane, Australia.
Sharp RE, Cho I-J, Sivaguru M. Maintenance of root growth under water deficits by ABA accumulation: prevention of high levels of reactive oxygen species in the root growth zone. Symposium on Adaptation of Plants to Water-Limited Mediterranean-type Environments, CSIRO Div. Plant Industry, Perth, Australia, September 2004.
Sharp RE. ABA, ethylene, and the regulation root and shoot growth responses to water stress. Seminar at University of Western Australia, September 2004.
Sharp RE. Root growth maintenance during water deficits: physiology to functional genomics. Symposium: Can Physiological Research Contribute to Increased Productivity Under Water Scarcity? 4th International Crop Science Congress, Brisbane, Australia, September 2004.
Sharp RE. Regulation of root and leaf growth responses to water deficits. Ist Annual Research Symposium, Australian Center for Plant Functional Genomics, Adelaide, Australia, October 2004.
Sharp RE. Interaction with ethylene: changing views on the role of ABA in root and leaf growth responses to water deficits. Department of Plants, Soils and Biometeorology, Utah State University, November 2004.

2003

Bohnert H.J., Sharp R.E., Springer G.K., Davis G.L., Schachtman D.P.,Wu Y. and Nguyen H. Abiotic stress tolerance in corn. Plant Membrane Workshop. Cuernavaca, Mexico. May 2003.
Bohnert H.J. Gene families and their expression during salt and drought stress. Burris Symposium, South Dakota State U. August 2003.
Bohnert H.J. Transcript and metabolite analysis during plant stress. DOE Planning Meeting Ecosystems Biology. Washington DC. September 2003.
Bohnert H.J., Sharp R.E., Springer G.K., Davis G.L., Schachtman D.P., Wu Y. and Nguyen H. Analysis of the corn root transcriptome. Danforth Center Root Biology Consortium Meeting. St Louis. September 2003.
Bohnert H.J., Sharp R.E., Springer G.K., Davis G.L., Schachtman D.P., Wu Y. and Nguyen H. Abiotic stress tolerance in corn. 2003 ASA-CSSA-SSSA Annual meeting. Denver. November 2003.
Davis, G. 'Rice-maize synteny: Implications for functional genomics.' Rice Genome Meeting, February 2003, Tsukuba, Japan
Nguyen, H.T. Genetic mapping and functional genomics of drought tolerance. Seoul National University, May 2003, South Korea.
Nguyen, H.T. Plant stress genomics. National Institute of Agricultural Biotechnology. Rural Development Administration, May 2003, Suwon, South Korea.
Nguyen, H.T. Biotechnology and plant stress genomics. United States-Vietnam Joint Committee on Science and Technology meeting. Hanoi, Vietnam. November 2003.
Sharp RE, HJ Bohnert, GL Davis, GK Springer, DP Schachtman , J Gross, Y Wu, and HT Nguyen. 'Root growth maintenance during water deficits: Physiology to Functional Genomics'. Plant and Animal Genome XI Conference, San Diego, January 2003
Sharp RE, ME LeNoble, and I-J Cho. 'Maintenance of root and shoot growth by ABA: The role of ethylene suppression'. Society for Experimental Biology symposium on Crosstalk in Plant Signal Transduction, University of Southampton, UK, April 2003
Sharp R.E., Cho I-J. and Sivaguru M. Maintenance of root growth by ABA accumulation under water deficits: prevention of high levels of reactive oxygen species in the root growth zone. Mini-symposium on Oxidative Processes Annual Meeting of the American Society of Plant Biologists. Honolulu, Hawaii. July 2003.
Sharp R.E., Cho I-J. and Sivaguru M. Maintenance of root growth under water deficits by ABA accumulation: prevention of high levels of reactive oxygen species in the root growth zone. 2nd Annual Midwest Rhizosphere Research Symposium. St Louis. September 2003.
Sharp R.E., Bohnert H.J., Springer G.K., Davis G.L., Schachtman D.P., Wu Y. and Nguyen H. Root growth maintenance during water deficits: physiology to functional genomics. International Conference on Water-Saving Agriculture and Sustainable Use of Water and Land Resources. Yangling, P.R. China. October 2003.
Sharp R.E., Bohnert H.J., Springer G.K., Davis G.L., Schachtman D.P., Wu Y. and Nguyen H. Root growth maintenance during water deficits: physiology to functional genomics. Symposium on Physiology and Genetics of Plant Responses to Environmental Stress. 2003 Annual Meetings, American Society of Agronomy. Denver, Colorado. November 2003.

2002

Cho I-J, Tan BC, McCarty DR, and Sharp RE. 2002. The vp14 mutant confirms that ABA maintains root growth under water deficits. First Annual Midwest Rhizosphere Research Symposium, Danforth Plant Science Center, St. Louis, Missouri.
Schachtman, D. 'Engineering zinc uptake in cereal root and whole plants', Horticulture Department, Purdue University. September 2002.
Schachtman, D. Agricultural Plant Stress II APSRC Symposium, Chonnam National University, Kwangju, South Korea, October 2002.
Sharp RE. 'Interaction with ethylene: changing views on the role of ABA in root and shoot growth regulation.' Harvard Forest Workshop on Long Distance Transport Processes in Plants, Harvard University, October 2002.
Sharp RE. 'Mechanisms of root growth maintenance during water deficits.' BASF Inc., Raleigh-Durham, NC, October 2002.